About

I am a computer scientist working at the Wellcome Trust Centre for Human Genetics in the University of Oxford. I work on a variety of computational problems in biological applications.


Contact

Email jerome.kelleher@well.ox.ac.uk
Me

Jerome Kelleher

GitHub @jeromekelleher
Twitter @jeromekelleher
Orcid orcid.org/0000-0002-7894-5253
Google Scholar profile

Address:

Dr Jerome Kelleher
Wellcome Trust Centre for Human Genetics
Roosevelt Drive
Oxford
OX3 7BN

Activities


CV Sketch

2014-present
Senior statistical programmer in the McVean Group at the Wellcome Trust Centre for Human Genetics, University of Oxford.
2008-2014
Postdoc, primarily at the Institute of Evolutionary Biology, University of Edinburgh and also at the Department of Statistics, University of Oxford.
2005-2008
Seniour Software Architect, MPSTOR.
2002-2005
PhD Computer Science, University College Cork (thesis).
1998-2002
BSc Computer Science, University College Cork.

Publications

Jerome Kelleher, Alison M. Etheridge and Gilean McVean. Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. PLoS Computational Biology, Volume 12, May 2016, e1004842. link

Jerome Kelleher, Alison M. Etheridge, Amandine Véber and Nicholas H. Barton. Spread of pedigree versus genetic ancestry in spatially distributed populations. Theoretical Population Biology, Volume 108, April 2016, Pages 1–12. link

Jerome Kelleher, Alison M. Etheridge and Nicholas H. Barton. Coalescent simulation in continuous space: Algorithms for large neighbourhood size. Theoretical Population Biology, Volume 95, August 2014, Pages 13–23. link

Jerome Kelleher, Rob W. Ness and Daniel L. Halligan. Processing genome scale tabular data with wormtable. BMC Bioinformatics, 14:356, 2013. link

Jerome Kelleher, Nicholas H. Barton and Alison M. Etheridge. Coalescent simulation in continuous space. Bioinformatics, Volume 29, Issue 7, pp. 955-956, 2013. link

Nicholas H. Barton, Alison M. Etheridge, Jerome Kelleher and Amandine Véber. Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks. Theoretical Population Biology, Volume 87, August 2013, Pages 105–119. link

Nicholas H. Barton, Alison M. Etheridge, Jerome Kelleher and Amandine Véber. Genetic hitchhiking in spatially extended populations. Theoretical Population Biology, Volume 87, August 2013, Pages 75–89. link

Nicholas H. Barton, Jerome Kelleher and Alison M. Etheridge. A new model for extinction and recolonisation in two dimensions: quantifying phylogeography. Evolution, Volume 64, Issue 9, pp 2701-2715, 2010. link

Konrad Lohse and Jerome Kelleher. Measuring the degree of starshape in genealogies --- summary statistics and demographic inference. Genetics Research, Volume 91, Issue 04, pp 281-292, 2009. link

William Opperman and Jerome Kelleher. A Data Storage System, International Patent WO/2008/007348, 2008. link

Jerome Kelleher. Encoding Partitions as Ascending Compositions. PhD thesis, University College Cork, 2006. pdf

Jerome Kelleher and Derek Bridge. An Accurate and Scalable Collaborative Recommender. Artificial Intelligence Review, Volume 21, Issue 3-4, pp.193-213, 2004. link

Stefano Bistarelli, Jerome Kelleher and Barry O'Sullivan. Tradeoff Generation using Soft Constraints, Recent Advances in Constraints, Springer, LNAI 3010 2004. link

Jerome Kelleher and Barry O'Sullivan. Evaluation-Based Semiring Meta-Constraints. Proceedings of MICAI, Springer, LNCS 2972 Mexico, 2004. pdf

Jerome Kelleher and Derek Bridge. RecTree Centroid: An Accurate, Scalable Collaborative Recommender. Proceedings of AICS, Trinity College, Dublin, pp.89-94, 2003. pdf

Stefano Bistarelli, Jerome Kelleher and Barry O'Sullivan. Symmetry Breaking in Soft CSPs. Proceedings of AI-2003, Springer, Cambridge, UK, 2003. pdf

Jerome Kelleher and Barry O'Sullivan. Evaluation-Based Semiring Meta-Constraints. Proceedings of AICS-2003, Poster Paper, Dublin, Ireland, 2003.

Jerome Kelleher and Barry O'Sullivan. Optimising the Representation and Evaluation of Semiring Combination Constraints. Principles and Practice of Constraint Programming - CP2003, LNCS, 2003.

Derek Bridge and Jerome Kelleher. Experiments in Sparsity reduction: Using Clustering in Collaborative Recommenders. Proceedings of AICS-2002, LNAI 2464, Springer, pp.144-149, 2002. pdf

Preprints

Jerome Kelleher. The large-parts formula for p(n). arXiv, 1002.1458, 2010 link

Jerome Kelleher and Barry O'Sullivan. Generating All Partitions: A Comparison Of Two Encodings. arXiv, 0909.2331, 2009 link

social